Pseudomonas putida F1, Pput_2121

Cytoplasmic Membrane
Outer Membrane
View in JBrowse View in GBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP


Database Xref Pathway Version Evidence PMID
KEGG ppf03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction 113 140 -
Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 IPR017734 Type VI secretion system, lipoprotein SciN 157 255 1.9E-20
Gene3D G3DSA: IPR038706 Type VI secretion protein SciN-like superfamily 140 263 8.2E-23
TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family IPR017734 Type VI secretion system, lipoprotein SciN 156 257 3.0E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.