Pseudomonas putida W619, PputW619_2496

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50893
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009380 excinuclease repair complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00630
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006289 nucleotide-excision repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00630
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00630
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50893
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppw03420 Nucleotide excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd03270 ABC_UvrA_I 12 463 1.214E-83
ProSitePatterns PS00211 ABC transporters family signature. IPR017871 ABC transporter, conserved site 375 389 -
TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A IPR004602 UvrABC system subunit A 133 823 0.0
ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile. IPR003439 ABC transporter-like 498 829 9.757
Pfam PF17755 UvrA DNA-binding domain IPR041552 UvrA DNA-binding domain 162 275 8.8E-18
MobiDBLite mobidb-lite consensus disorder prediction 551 573 -
Gene3D G3DSA:3.40.50.300 501 834 1.9E-127
ProSitePatterns PS00211 ABC transporters family signature. IPR017871 ABC transporter, conserved site 728 742 -
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 12 457 6.61E-31
Pfam PF00005 ABC transporter IPR003439 ABC transporter-like 508 759 1.2E-8
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 504 812 5.27E-45
Gene3D G3DSA:1.20.1580.10 590 728 1.9E-127

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.