Pseudomonas putida W619, PputW619_2499

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0009279 cell outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01021
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016021 integral component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01021
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppw03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppw02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF103088 IPR036737 OmpA-like domain superfamily 707 827 3.53E-24
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 124 271 2.62E-9
Pfam PF00691 OmpA family IPR006665 OmpA-like domain 725 809 4.9E-14
Pfam PF14331 ImcF-related N-terminal domain IPR025743 IcmF-related, N-terminal domain 190 447 3.3E-72
Gene3D G3DSA:3.40.50.300 116 281 1.9E-6
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 765 781 4.0E-7
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 750 765 4.0E-7
CDD cd07185 OmpA_C-like IPR006665 OmpA-like domain 715 827 1.60936E-27
Coils Coil 464 484 -
ProSiteProfiles PS51123 OmpA-like domain profile. IPR006665 OmpA-like domain 703 831 37.766
Pfam PF06761 Intracellular multiplication and human macrophage-killing IPR009612 IcmF-related 498 693 3.8E-15
TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF IPR017731 Type VI secretion system, IcmF 18 559 5.3E-127
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 719 741 4.0E-7
Gene3D G3DSA:3.30.1330.60 IPR036737 OmpA-like domain superfamily 699 831 7.3E-34

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.