Pseudomonas putida GB-1, PputGB1_0008
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003676 | nucleic acid binding |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Biological Process | GO:0015074 | DNA integration |
Inferred from Sequence Model
Term mapped from: InterPro:PF00665
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00665 | Integrase core domain | IPR001584 | Integrase, catalytic core | 258 | 370 | 3.8E-9 |
| Gene3D | G3DSA:3.30.420.10 | - | IPR036397 | Ribonuclease H superfamily | 252 | 469 | 4.7E-32 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | IPR012337 | Ribonuclease H-like superfamily | 253 | 453 | 3.03E-20 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.