Pseudomonas putida GB-1, PputGB1_0089

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006779 porphyrin-containing compound biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000166
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004109 coproporphyrinogen oxidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000166
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppg01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppg00860 Porphyrin and chlorophyll metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppg01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00073 Coprogen oxidase signature IPR001260 Coproporphyrinogen III oxidase, aerobic 124 146 3.5E-85
PANTHER PTHR10755 COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL IPR001260 Coproporphyrinogen III oxidase, aerobic 5 301 1.4E-125
Pfam PF01218 Coproporphyrinogen III oxidase IPR001260 Coproporphyrinogen III oxidase, aerobic 8 300 0.0
PRINTS PR00073 Coprogen oxidase signature IPR001260 Coproporphyrinogen III oxidase, aerobic 47 68 3.5E-85
Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. IPR001260 Coproporphyrinogen III oxidase, aerobic 2 276 55.766636
PIRSF PIRSF000166 Coproporphyri_ox IPR001260 Coproporphyrinogen III oxidase, aerobic 1 302 1.3E-127
PRINTS PR00073 Coprogen oxidase signature IPR001260 Coproporphyrinogen III oxidase, aerobic 30 46 3.5E-85
PRINTS PR00073 Coprogen oxidase signature IPR001260 Coproporphyrinogen III oxidase, aerobic 261 287 3.5E-85
PRINTS PR00073 Coprogen oxidase signature IPR001260 Coproporphyrinogen III oxidase, aerobic 233 260 3.5E-85
SUPERFAMILY SSF102886 Coproporphyrinogen III oxidase IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily 4 301 0.0
PRINTS PR00073 Coprogen oxidase signature IPR001260 Coproporphyrinogen III oxidase, aerobic 161 190 3.5E-85
Gene3D G3DSA:3.40.1500.10 Coproporphyrinogen III oxidase, aerobic IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily 1 303 0.0
PRINTS PR00073 Coprogen oxidase signature IPR001260 Coproporphyrinogen III oxidase, aerobic 89 113 3.5E-85
FunFam G3DSA:3.40.1500.10:FF:000001 Oxygen-dependent coproporphyrinogen-III oxidase - - 1 301 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.