Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF04542
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0016987 | sigma factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006352 | DNA-templated transcription, initiation |
Inferred from Sequence Model
Term mapped from: InterPro:PF04542
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003700 | DNA-binding transcription factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF04542
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
|
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
FunFam | G3DSA:1.10.1740.10:FF:000009 | RNA polymerase sigma factor | - | - | 1 | 87 | 3.8E-40 |
Pfam | PF04542 | Sigma-70 region 2 | IPR007627 | RNA polymerase sigma-70 region 2 | 10 | 74 | 2.4E-16 |
Pfam | PF08281 | Sigma-70, region 4 | IPR013249 | RNA polymerase sigma factor 70, region 4 type 2 | 106 | 158 | 6.3E-15 |
NCBIfam | TIGR02937 | JCVI: sigma-70 family RNA polymerase sigma factor | IPR014284 | RNA polymerase sigma-70 like domain | 7 | 155 | 5.7E-22 |
SUPERFAMILY | SSF88946 | Sigma2 domain of RNA polymerase sigma factors | IPR013325 | RNA polymerase sigma factor, region 2 | 7 | 93 | 2.28E-16 |
Gene3D | G3DSA:1.10.10.10 | - | IPR036388 | Winged helix-like DNA-binding domain superfamily | 103 | 159 | 4.1E-13 |
Gene3D | G3DSA:1.10.1740.10 | - | - | - | 2 | 72 | 2.1E-15 |
SUPERFAMILY | SSF88659 | Sigma3 and sigma4 domains of RNA polymerase sigma factors | IPR013324 | RNA polymerase sigma factor, region 3/4-like | 101 | 159 | 3.71E-13 |
PANTHER | PTHR43133 | RNA POLYMERASE ECF-TYPE SIGMA FACTO | IPR039425 | RNA polymerase sigma-70 like | 8 | 155 | 2.0E-29 |