Pseudomonas putida GB-1, PputGB1_0629

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50885
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016021 integral component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50885
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppg02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppg02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd06225 HAMP IPR003660 HAMP domain 318 366 9.51048E-7
Gene3D G3DSA:3.30.450.20 168 293 2.4E-21
ProSiteProfiles PS50111 Bacterial chemotaxis sensory transducers domain profile. IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 375 611 42.983
CDD cd11386 MCP_signal 412 610 9.9186E-53
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 291 311 4.5E-6
SMART SM00283 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 385 646 8.3E-73
Pfam PF02743 Cache domain IPR033479 Double Cache domain 1 46 277 7.0E-28
Pfam PF00672 HAMP domain IPR003660 HAMP domain 314 366 4.8E-9
MobiDBLite mobidb-lite consensus disorder prediction 427 451 -
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 430 611 7.0E-39
SUPERFAMILY SSF58104 338 647 7.98E-75
Coils Coil 453 473 -
SMART SM00304 IPR003660 HAMP domain 316 370 4.7E-9
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 512 541 4.5E-6
CDD cd12912 PDC2_MCP_like 197 284 1.20364E-14
SUPERFAMILY SSF103190 IPR029151 Periplasmic sensor-like domain superfamily 101 203 1.57E-8
Gene3D G3DSA:1.10.287.950 316 647 5.1E-72
CDD cd12913 PDC1_MCP_like 106 194 1.75907E-8
ProSiteProfiles PS50885 HAMP domain profile. IPR003660 HAMP domain 316 370 10.148

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.