Pseudomonas putida GB-1, PputGB1_1019

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30514
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30514
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:1901135 carbohydrate derivative metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01380
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0097367 carbohydrate derivative binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01380
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30514
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53697 SIS domain IPR046348 SIS domain superfamily 94 281 1.18E-39
Coils Coil Coil - - 1 24 -
Pfam PF01380 SIS domain IPR001347 SIS domain 128 256 9.4E-21
Gene3D G3DSA:3.40.50.10490 - - - 97 280 2.5E-39
PANTHER PTHR30514 GLUCOKINASE IPR047640 HTH-type transcriptional regulator RpiR-like 5 281 6.7E-86
FunFam G3DSA:3.40.50.10490:FF:000009 DNA-binding transcriptional regulator HexR - - 96 281 9.4E-102
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 79 1.2E-23
CDD cd05013 SIS_RpiR IPR035472 RpiR-like, SIS domain 120 257 1.18444E-41
FunFam G3DSA:1.10.10.10:FF:000060 DNA-binding transcriptional regulator HexR - - 5 81 3.7E-38
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 5 81 8.78E-21
Pfam PF01418 Helix-turn-helix domain, rpiR family IPR000281 Helix-turn-helix protein RpiR 6 80 2.7E-29

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.