Pseudomonas putida GB-1, PputGB1_2047

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015891 siderophore transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009279 cell outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015344 siderophore uptake transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0038023 signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.170.130.10 - IPR037066 TonB-dependent receptor, plug domain superfamily 35 164 3.6E-23
TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor IPR010105 TonB-dependent siderophore receptor 59 716 9.2E-76
Pfam PF07715 TonB-dependent Receptor Plug Domain IPR012910 TonB-dependent receptor, plug domain 57 156 5.3E-16
PANTHER PTHR32552 FERRICHROME IRON RECEPTOR-RELATED IPR039423 TonB-dependent receptor-like 6 716 0.0
CDD cd01347 ligand_gated_channel - - 63 716 9.94788E-78
Gene3D G3DSA:2.40.170.20 - IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily 171 716 6.5E-101
PANTHER PTHR32552:SF84 TONB-DEPENDENT RECEPTOR-RELATED - - 6 716 0.0
SUPERFAMILY SSF56935 Porins - - 40 716 1.26E-117
Pfam PF00593 TonB dependent receptor IPR000531 TonB-dependent receptor-like, beta-barrel 264 714 8.9E-50

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.