Pseudomonas putida GB-1, PputGB1_2764

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppg02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR35850 CYTOPLASMIC PROTEIN-RELATED IPR008312 Type VI secretion system sheath protein TssB1 4 169 2.3E-58
NCBIfam TIGR03358 JCVI: type VI secretion system contractile sheath small subunit IPR008312 Type VI secretion system sheath protein TssB1 8 164 8.3E-62
PIRSF PIRSF028301 UCP028301 IPR008312 Type VI secretion system sheath protein TssB1 2 177 1.8E-71
Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 IPR008312 Type VI secretion system sheath protein TssB1 12 164 9.5E-62
Coils Coil Coil - - 140 160 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.