Pseudomonas putida GB-1, PputGB1_3986 (argD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006525 arginine metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00707
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0030170 pyridoxal phosphate binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00610
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.640.10
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008483 transaminase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00610
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006520 cellular amino acid metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03246
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppg01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppg00330 Arginine and proline metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00202 Aminotransferase class-III IPR005814 Aminotransferase class-III 20 400 0.0
TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family IPR017652 Acetyl/Succinylornithine transaminase family, bacteria 8 403 0.0
PIRSF PIRSF000521 Transaminase_4ab_Lys_Orn IPR005814 Aminotransferase class-III 27 157 9.8E-5
PANTHER PTHR11986 AMINOTRANSFERASE CLASS III - - 5 404 0.0
TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family IPR004636 Acetylornithine/Succinylornithine transaminase family 17 400 0.0
PANTHER PTHR11986:SF113 ACETYLORNITHINE/SUCCINYLDIAMINOPIMELATE AMINOTRANSFERASE - - 5 404 0.0
Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. IPR004636 Acetylornithine/Succinylornithine transaminase family 16 403 71.00975
Gene3D G3DSA:3.40.640.10 - IPR015421 Pyridoxal phosphate-dependent transferase, major domain 60 305 0.0
SUPERFAMILY SSF53383 PLP-dependent transferases IPR015424 Pyridoxal phosphate-dependent transferase 17 400 3.9E-129
Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase, domain 1 IPR015422 Pyridoxal phosphate-dependent transferase, small domain 30 392 0.0
PIRSF PIRSF000521 Transaminase_4ab_Lys_Orn IPR005814 Aminotransferase class-III 173 403 1.2E-36
CDD cd00610 OAT_like IPR005814 Aminotransferase class-III 14 400 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.