Pseudomonas putida GB-1, PputGB1_3987

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00032
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00032
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR46796 HTH-TYPE TRANSCRIPTIONAL ACTIVATOR RHAS-RELATED - - 145 311 3.6E-29
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 207 258 1.34E-8
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 230 308 3.7E-23
MobiDBLite mobidb-lite consensus disorder prediction - - 302 326 -
SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like IPR029062 Class I glutamine amidotransferase-like 5 189 1.04E-21
FunFam G3DSA:1.10.10.60:FF:000090 Transcriptional regulator ArgR, AraC family - - 204 309 2.7E-57
Gene3D G3DSA:3.40.50.880 - IPR029062 Class I glutamine amidotransferase-like 1 197 5.0E-30
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 276 291 9.5E-5
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 260 311 3.63E-12
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 224 307 1.3E-32
Gene3D G3DSA:1.10.10.60 - - - 204 313 2.6E-30
CDD cd03136 GATase1_AraC_ArgR_like - - 6 186 2.25768E-50
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 291 307 9.5E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.