Pseudomonas putida GB-1, PputGB1_3991

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0030288 outer membrane-bounded periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01096
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0071705 nitrogen compound transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01096
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppg02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01096 JCVI: lysine/arginine/ornithine ABC transporter substrate-binding protein IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter 4 251 1.0E-85
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 1 255 3.26E-70
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 25 254 3.0E-79
CDD cd13703 PBP2_HisJ_LAO - - 23 251 2.11757E-129
Gene3D G3DSA:3.40.190.10 - - - 27 250 6.3E-77
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 26 252 3.4E-62
Gene3D G3DSA:3.40.190.10 - - - 111 211 6.3E-77
PANTHER PTHR35936 MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE F - - 5 252 6.2E-49

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.