Pseudomonas putida S16, PPS_0056
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: TTCGCGGGTAAACCCGCTCCCACAGG-N30-CCTGTGGGAGCGGGTTTACCCGCGAA | 56697 | 56778 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GCCAGGGCAT-N17-ATGCCCTGGC | 56574 | 56610 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: TTCGCGGGTAAACCCGCTCCCACAGG-N30-CCTGTGGGAGCGGGTTTACCCGCGAA | 56697 | 56778 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GCTGCCCCTG-N8-CAGGGGCAGC | 55487 | 55514 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GCCCATCGCGAC-N57-GTCGCGATGGGC | 55909 | 55989 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: CAAGGCCGCTCCCACA-N23-TGTGGGAGCGGCCTTG | 55922 | 55976 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Rho-independent transcription terminator TERM 12 | 55925 | 55973 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |