Pseudomonas putida S16, PPS_0583

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016021 integral component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppt02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppt02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.450.20 193 289 1.8E-30
ProSiteProfiles PS50885 HAMP domain profile. IPR003660 HAMP domain 316 370 10.095
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 291 311 6.9E-6
ProSiteProfiles PS50111 Bacterial chemotaxis sensory transducers domain profile. IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 375 611 42.92
Pfam PF02743 Cache domain IPR033479 Double Cache domain 1 46 278 8.8E-27
Gene3D G3DSA:3.30.450.20 107 192 1.8E-30
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 512 541 6.9E-6
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 430 611 7.4E-39
SMART SM00304 IPR003660 HAMP domain 316 370 3.3E-9
Gene3D G3DSA:1.10.287.950 316 647 3.9E-71
Coils Coil 453 473 -
MobiDBLite mobidb-lite consensus disorder prediction 427 446 -
MobiDBLite mobidb-lite consensus disorder prediction 427 445 -
SMART SM00283 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 385 646 8.3E-71
SUPERFAMILY SSF103190 IPR029151 Periplasmic sensor-like domain superfamily 98 203 8.63E-9
SUPERFAMILY SSF58104 338 647 4.71E-74
Pfam PF00672 HAMP domain IPR003660 HAMP domain 314 366 3.3E-9
CDD cd12912 PDC2_MCP_like 197 284 1.16897E-14
CDD cd12913 PDC1_MCP_like 113 194 2.38637E-7
CDD cd06225 HAMP IPR003660 HAMP domain 318 366 9.60431E-7
CDD cd11386 MCP_signal 412 610 2.63932E-52

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.