Pseudomonas putida S16, PPS_0583
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0004888 | transmembrane signaling receptor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006935 | chemotaxis |
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppt02020 | Two-component system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppt02030 | Bacterial chemotaxis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.10.287.950 | - | - | - | 316 | 647 | 4.8E-73 |
| SMART | SM00283 | MA_2 | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 385 | 646 | 8.3E-71 |
| CDD | cd11386 | MCP_signal | - | - | 412 | 610 | 3.1979E-52 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 427 | 445 | - |
| Pfam | PF00672 | HAMP domain | IPR003660 | HAMP domain | 314 | 366 | 3.5E-9 |
| PANTHER | PTHR32089 | METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB | - | - | 20 | 646 | 1.8E-112 |
| Coils | Coil | Coil | - | - | 453 | 473 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 193 | 288 | 7.1E-33 |
| SUPERFAMILY | SSF58104 | Methyl-accepting chemotaxis protein (MCP) signaling domain | - | - | 338 | 647 | 4.71E-74 |
| SUPERFAMILY | SSF103190 | Sensory domain-like | IPR029151 | Periplasmic sensor-like domain superfamily | 98 | 203 | 8.63E-9 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 427 | 446 | - |
| FunFam | G3DSA:1.10.287.950:FF:000001 | Methyl-accepting chemotaxis sensory transducer | - | - | 316 | 647 | 5.5E-94 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 316 | 370 | 3.3E-9 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 92 | 192 | 7.1E-33 |
| Pfam | PF00015 | Methyl-accepting chemotaxis protein (MCP) signalling domain | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 430 | 611 | 7.9E-39 |
| PRINTS | PR00260 | Bacterial chemotaxis sensory transducer signature | IPR004090 | Chemotaxis methyl-accepting receptor | 512 | 541 | 6.9E-6 |
| PRINTS | PR00260 | Bacterial chemotaxis sensory transducer signature | IPR004090 | Chemotaxis methyl-accepting receptor | 291 | 311 | 6.9E-6 |
| Pfam | PF02743 | Cache domain | IPR033479 | Double Cache domain 1 | 47 | 278 | 2.3E-26 |
| CDD | cd06225 | HAMP | - | - | 319 | 365 | 9.01365E-8 |
| CDD | cd12912 | PDC2_MCP_like | - | - | 197 | 284 | 1.41637E-14 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.