Pseudomonas putida S16, PPS_0584

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0045893 positive regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd01108
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00040
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00040
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30204
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005507 copper ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd01108
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46955 Putative DNA-binding domain IPR009061 Putative DNA-binding domain superfamily 12 137 1.54E-39
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 48 68 3.8E-9
PANTHER PTHR30204 REDOX-CYCLING DRUG-SENSING TRANSCRIPTIONAL ACTIVATOR SOXR IPR047057 MerR transcriptional regulator 12 124 1.2E-26
CDD cd01108 HTH_CueR IPR011789 Cu(I)-responsive transcriptional regulator 12 138 3.85383E-79
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 24 37 3.8E-9
Pfam PF00376 MerR family regulatory protein IPR000551 MerR-type HTH domain 13 50 3.5E-17
Pfam PF09278 MerR, DNA binding IPR015358 Transcription regulator MerR, DNA binding 56 118 4.4E-20
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 13 24 3.8E-9
Gene3D G3DSA:1.10.1660.10 - - - 3 136 2.5E-37
SMART SM00422 merrmega3 IPR000551 MerR-type HTH domain 12 81 7.3E-33
Coils Coil Coil - - 92 119 -
NCBIfam TIGR02044 JCVI: Cu(I)-responsive transcriptional regulator IPR011789 Cu(I)-responsive transcriptional regulator 12 137 1.1E-54

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.