Pseudomonas putida S16, PPS_2828

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppt03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF69279 Phage tail proteins - - 25 195 4.68E-52
Gene3D G3DSA:2.30.110.50 - - - 29 346 3.9E-99
SUPERFAMILY SSF69255 gp5 N-terminal domain-like - - 376 464 4.58E-32
Gene3D G3DSA:2.40.50.230 - IPR037026 Vgr protein, OB-fold domain superfamily 367 468 5.6E-42
Gene3D G3DSA:3.55.50.10 - - - 107 199 3.9E-99
NCBIfam TIGR03361 JCVI: type VI secretion system tip protein TssI/VgrG N-terminal domain IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset 24 535 0.0
NCBIfam TIGR01646 JCVI: type VI secretion system tip protein VgrG IPR006533 Type VI secretion system, RhsGE-associated Vgr protein 32 517 0.0
SUPERFAMILY SSF69349 Phage fibre proteins - - 454 603 4.32E-35
SUPERFAMILY SSF69279 Phage tail proteins - - 206 376 4.08E-31
PANTHER PTHR32305 - - - 78 541 7.2E-58
Pfam PF05954 Phage tail baseplate hub (GPD) - - 38 346 1.2E-93
Gene3D G3DSA:4.10.220.110 - - - 233 298 3.9E-99
Pfam PF04717 Type VI secretion system/phage-baseplate injector OB domain IPR006531 Gp5/Type VI secretion system Vgr protein, OB-fold domain 398 465 6.3E-15
Pfam PF06715 Gp5 C-terminal repeat (3 copies) IPR010609 Gp5, C-terminal 525 547 6.2E-6

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.