Pseudomonas putida S16, PPS_2841

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0016887	ATPase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00382	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00300	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppt03070	Bacterial secretion system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppt02025	Biofilm formation - Pseudomonas aeruginosa	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
CDD	cd19499	RecA-like_ClpB_Hsp104-like	-	-	557	763	5.32204E-78
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	542	840	2.06E-64
Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	IPR003959	ATPase, AAA-type, core	221	333	1.1E-8
FunFam	G3DSA:3.40.50.300:FF:000025	ATP-dependent Clp protease subunit	-	-	546	763	3.0E-79
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	704	718	1.4E-32
Pfam	PF17871	AAA lid domain	IPR041546	ClpA/ClpB, AAA lid domain	361	453	1.6E-28
Pfam	PF10431	C-terminal, D2-small domain, of ClpB protein	IPR019489	Clp ATPase, C-terminal	768	839	8.4E-13
SUPERFAMILY	SSF81923	Double Clp-N motif	IPR036628	Clp, N-terminal domain superfamily	9	127	6.77E-18
CDD	cd00009	AAA	-	-	200	359	6.06866E-14
Gene3D	G3DSA:1.10.8.60	-	-	-	766	857	7.4E-10
Coils	Coil	Coil	-	-	430	450	-
SMART	SM01086	ClpB_D2_small_2	IPR019489	Clp ATPase, C-terminal	765	858	4.9E-8
Pfam	PF07724	AAA domain (Cdc48 subfamily)	IPR003959	ATPase, AAA-type, core	592	759	4.6E-42
Pfam	PF02861	Clp amino terminal domain, pathogenicity island component	IPR004176	Clp, repeat (R) domain	21	73	4.0E-6
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	642	660	1.4E-32
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	546	763	1.0E-68
Coils	Coil	Coil	-	-	461	481	-
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	177	503	4.91E-71
SMART	SM00382	AAA_5	IPR003593	AAA+ ATPase domain	216	361	2.7E-10
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	362	540	4.4E-45
Gene3D	G3DSA:1.10.1780.10	-	IPR036628	Clp, N-terminal domain superfamily	1	158	1.1E-39
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	597	615	1.4E-32
SMART	SM00382	AAA_5	IPR003593	AAA+ ATPase domain	593	751	5.5E-9
NCBIfam	TIGR03345	JCVI: type VI secretion system ATPase TssH	IPR017729	AAA+ ATPase ClpV1	10	849	0.0
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	671	689	1.4E-32
FunFam	G3DSA:3.40.50.300:FF:000010	Chaperone clpB 1, putative	-	-	167	360	4.6E-82
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	167	360	1.3E-70
PANTHER	PTHR11638	ATP-DEPENDENT CLP PROTEASE	-	-	14	839	0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.