Pseudomonas putida S16, PPS_3177

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00267 duf1_3 IPR000160 GGDEF domain 256 428 4.8E-67
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 10 115 7.25E-18
Pfam PF08448 PAS fold IPR013656 PAS fold-4 150 256 1.9E-8
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 264 427 4.3E-44
SMART SM00086 pac_2 IPR001610 PAC motif 74 116 0.0037
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 134 680 0.0
Gene3D G3DSA:3.30.450.20 PAS domain - - 130 265 4.4E-11
Coils Coil Coil - - 116 136 -
SMART SM00091 pas_2 IPR000014 PAS domain 142 209 8.5E-6
CDD cd01948 EAL IPR001633 EAL domain 444 680 3.31363E-108
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 272 429 5.89E-51
SMART SM00091 pas_2 IPR000014 PAS domain 1 67 4.0
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 262 430 3.5E-45
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 266 440 4.1E-60
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 132 254 1.61E-9
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 267 424 3.6E-50
CDD cd01949 GGDEF IPR000160 GGDEF domain 268 425 2.36327E-65
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 441 687 9.7E-95
Pfam PF00563 EAL domain IPR001633 EAL domain 445 675 4.0E-71
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 1 123 1.0E-14
CDD cd00130 PAS IPR000014 PAS domain 11 113 5.27812E-8
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 443 684 1.57E-87
CDD cd00130 PAS IPR000014 PAS domain 151 252 4.46751E-6
Pfam PF00989 PAS fold IPR013767 PAS fold 1 113 8.1E-9
Gene3D G3DSA:3.30.450.20 PAS domain - - 1 129 8.2E-22
SMART SM00052 duf2_2 IPR001633 EAL domain 438 680 1.1E-104

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.