Pseudomonas putida S16, PPS_3213

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0009339 glycolate oxidase complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00387
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003973 (S)-2-hydroxy-acid oxidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00387
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02913
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0050660 flavin adenine dinucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01565
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppt01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppt01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppt01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppt00630 Glyoxylate and dicarboxylate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppt01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF56176 FAD-binding/transporter-associated domain-like IPR036318 FAD-binding, type PCMH-like superfamily 20 231 9.81E-68
SUPERFAMILY SSF55103 FAD-linked oxidases, C-terminal domain IPR016164 FAD-linked oxidase-like, C-terminal 204 474 5.89E-80
NCBIfam TIGR00387 JCVI: glycolate oxidase subunit GlcD IPR004490 Glycolate oxidase subunit GlcD 59 470 0.0
Gene3D G3DSA:3.30.43.10 - IPR016167 FAD-binding, type PCMH, subdomain 1 9 108 2.6E-22
PANTHER PTHR42934 GLYCOLATE OXIDASE SUBUNIT GLCD - - 15 489 0.0
Pfam PF02913 FAD linked oxidases, C-terminal domain IPR004113 FAD-binding oxidoreductase/transferase, type 4, C-terminal 230 470 6.9E-70
Gene3D G3DSA:1.10.45.10 - IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 432 471 2.0E-10
Gene3D G3DSA:3.30.465.10 - IPR016169 FAD-binding, type PCMH, subdomain 2 110 229 9.1E-36
Gene3D G3DSA:3.30.70.2190 - - - 231 344 2.0E-5
Pfam PF01565 FAD binding domain IPR006094 FAD linked oxidase, N-terminal 56 194 1.1E-38
Gene3D G3DSA:3.30.70.2740 - - - 350 431 5.8E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.