Pseudomonas putida S16, PPS_3223

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00342	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0043565	sequence-specific DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00342	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00342	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SMART	SM00342	aracneu4	IPR018060	DNA binding HTH domain, AraC-type	247	330	2.6E-23
SUPERFAMILY	SSF46689	Homeodomain-like	IPR009057	Homeobox-like domain superfamily	283	332	1.21E-13
Pfam	PF12833	Helix-turn-helix domain	IPR018060	DNA binding HTH domain, AraC-type	254	332	3.6E-17
Coils	Coil	Coil	-	-	266	286	-
PRINTS	PR00032	AraC bacterial regulatory protein HTH signature	IPR020449	Transcription regulator HTH, AraC- type	314	330	2.4E-6
Gene3D	G3DSA:1.10.10.60	-	-	-	227	334	4.8E-24
PANTHER	PTHR47894	HTH-TYPE TRANSCRIPTIONAL REGULATOR GADX	-	-	4	334	5.7E-60
Pfam	PF12625	Arabinose-binding domain of AraC transcription regulator, N-term	IPR032687	HTH-type transcriptional regulator AraC-type, N-terminal	26	204	1.8E-28
PRINTS	PR00032	AraC bacterial regulatory protein HTH signature	IPR020449	Transcription regulator HTH, AraC- type	299	314	2.4E-6

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.