Pseudomonas putida S16, PPS_3231

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47384
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47384
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13185
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 879 1009 5.83E-18
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1023 1144 1.22E-39
SMART SM00065 gaf_1 IPR003018 GAF domain 247 391 2.7E-7
Gene3D G3DSA:3.40.50.2300 - - - 759 876 3.8E-24
FunFam G3DSA:3.30.565.10:FF:000010 Sensor histidine kinase RcsC - - 547 709 1.1E-48
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 1027 1139 8.94313E-42
Gene3D G3DSA:1.10.287.130 - - - 446 546 2.6E-25
SMART SM00388 HisKA_10 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 480 548 6.4E-21
SUPERFAMILY SSF55781 GAF domain-like - - 236 409 4.32E-20
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 650 660 2.8E-15
CDD cd16922 HATPase_EvgS-ArcB-TorS-like - - 600 704 5.52144E-49
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 537 705 1.14E-44
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 547 709 5.0E-47
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 759 866 1.7E-15
MobiDBLite mobidb-lite consensus disorder prediction - - 415 450 -
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 632 646 2.8E-15
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1025 1139 2.3E-40
Coils Coil Coil - - 383 477 -
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 691 704 2.8E-15
Pfam PF00512 His Kinase A (phospho-acceptor) domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 481 548 1.5E-15
Pfam PF05227 CHASE3 domain IPR007891 CHASE3 40 172 1.5E-38
CDD cd00082 HisKA IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 481 544 1.22798E-12
Pfam PF13185 GAF domain IPR003018 GAF domain 251 382 3.9E-11
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 667 685 2.8E-15
CDD cd00156 REC - - 882 973 6.61833E-13
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 757 867 1.8E-17
PANTHER PTHR45339 HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J - - 370 939 0.0
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 881 963 3.4E-14
CDD cd19410 HK9-like_sensor - - 43 165 9.88733E-36
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 595 705 1.1E-26
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 595 707 1.0E-36
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1027 1139 3.6E-29
Gene3D G3DSA:3.40.50.2300 - - - 877 1013 3.2E-17
Gene3D G3DSA:3.40.50.2300 - - - 1025 1148 8.6E-45
Coils Coil Coil - - 597 617 -
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 879 993 2.3E-7
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 216 393 3.6E-18
MobiDBLite mobidb-lite consensus disorder prediction - - 428 443 -
SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily 466 549 2.16E-20
Coils Coil Coil - - 860 880 -
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 756 872 4.98E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.