Pseudomonas putida S16, PPS_3378

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF51645
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006097 glyoxylate cycle
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01274
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004474 malate synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01274
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppt01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc D-xylose degradation IV InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc chitin degradation to ethanol InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG ppt00620 Pyruvate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG ppt01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppt01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppt00630 Glyoxylate and dicarboxylate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc L-arabinose degradation IV InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG ppt01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.20.20.360:FF:000002 Malate synthase G - - 201 586 0.0
Hamap MF_00641 Malate synthase G [glcB]. IPR006253 Malate synthase G 1 725 387.771332
Gene3D G3DSA:3.20.20.360 Malate synthase, domain 3 IPR046363 Malate synthase, N-terminal and TIM-barrel domains 1 208 2.2E-59
SUPERFAMILY SSF51645 Malate synthase G IPR011076 Malate synthase superfamily 4 723 0.0
Pfam PF01274 Malate synthase IPR001465 Malate synthase 18 699 0.0
CDD cd00728 malate_synt_G IPR006253 Malate synthase G 9 722 0.0
PANTHER PTHR42739 MALATE SYNTHASE G IPR006253 Malate synthase G 1 724 0.0
Gene3D G3DSA:3.20.20.360 Malate synthase, domain 3 IPR046363 Malate synthase, N-terminal and TIM-barrel domains 210 587 0.0
Gene3D G3DSA:1.20.1220.12 Malate synthase, domain III IPR044856 Malate synthase, C-terminal superfamily 588 725 4.5E-76
NCBIfam TIGR01345 JCVI: malate synthase G IPR006253 Malate synthase G 5 724 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.