Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Biological Process | GO:0006310 | DNA recombination |
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0005524 | ATP binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006281 | DNA repair |
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.3260.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003910 | DNA ligase (ATP) activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
|
Database | Xref | Pathway | Version | Evidence | PMID |
---|---|---|---|---|---|
KEGG | ppt03410 | Base excision repair | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | ppt03430 | Mismatch repair | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | ppt03420 | Nucleotide excision repair | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | ppt03030 | DNA replication | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
NCBIfam | TIGR04120 | JCVI: cisplatin damage response ATP-dependent DNA ligase | IPR026333 | ATP-dependent DNA ligase, PP_1105 family | 2 | 551 | 0.0 |
SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | IPR012340 | Nucleic acid-binding, OB-fold | 425 | 550 | 3.43E-28 |
CDD | cd07972 | OBF_DNA_ligase_Arch_LigB | - | - | 425 | 549 | 3.10836E-61 |
Gene3D | G3DSA:2.40.50.140 | - | IPR012340 | Nucleic acid-binding, OB-fold | 424 | 552 | 1.3E-27 |
PANTHER | PTHR45674 | DNA LIGASE 1/3 FAMILY MEMBER | - | - | 3 | 550 | 5.8E-55 |
Pfam | PF04675 | DNA ligase N terminus | IPR012308 | DNA ligase, ATP-dependent, N-terminal | 2 | 161 | 8.2E-14 |
Pfam | PF04679 | ATP dependent DNA ligase C terminal region | IPR012309 | DNA ligase, ATP-dependent, C-terminal | 441 | 536 | 1.7E-8 |
SUPERFAMILY | SSF56091 | DNA ligase/mRNA capping enzyme, catalytic domain | - | - | 208 | 420 | 2.24E-53 |
Gene3D | G3DSA:1.10.3260.10 | - | IPR036599 | DNA ligase, ATP-dependent, N-terminal domain superfamily | 2 | 183 | 1.5E-9 |
Pfam | PF01068 | ATP dependent DNA ligase domain | IPR012310 | DNA ligase, ATP-dependent, central | 222 | 420 | 4.3E-25 |
CDD | cd07897 | Adenylation_DNA_ligase_Bac1 | - | - | 207 | 424 | 4.27182E-114 |
Gene3D | G3DSA:3.30.470.30 | DNA ligase/mRNA capping enzyme | - | - | 209 | 420 | 3.4E-42 |