Pseudomonas putida S16, PPS_4515

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006302 double-strand break repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01487
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009338 exodeoxyribonuclease V complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01487
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004386 helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01487
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008854 exodeoxyribonuclease V activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01487
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01487
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppt03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd17933 DEXSc_RecD-like - - 203 366 1.93378E-42
Pfam PF13538 UvrD-like helicase C-terminal domain IPR027785 UvrD-like helicase C-terminal domain 618 660 6.8E-12
NCBIfam TIGR01447 JCVI: exodeoxyribonuclease V subunit alpha IPR006344 RecBCD enzyme subunit RecD 34 688 0.0
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 554 679 5.7E-22
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 32 417 3.23E-49
CDD cd18809 SF1_C_RecD - - 592 665 3.5824E-18
Pfam PF13604 AAA domain - - 205 371 1.2E-29
Gene3D G3DSA:1.10.10.1020 - IPR041851 RecBCD enzyme subunit RecD, N-terminal domain 29 156 1.9E-30
Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. IPR006344 RecBCD enzyme subunit RecD 43 688 48.721512
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 334 668 3.98E-51
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 422 553 6.4E-23
PANTHER PTHR43788 DNA2/NAM7 HELICASE FAMILY MEMBER - - 203 661 5.1E-28
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 158 412 7.6E-72

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.