Pseudomonas putida S16, PPS_4516

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11070
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00609
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13361
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008854 exodeoxyribonuclease V activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00609
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003678 DNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11070
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016787 hydrolase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13361
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppt03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.3170.10 Recbcd, chain B, domain 2 - - 156 355 0.0
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 9 845 8.18E-105
Pfam PF00580 UvrD/REP helicase N-terminal domain IPR014016 UvrD-like helicase, ATP-binding domain 13 443 1.7E-56
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 9 445 0.0
SUPERFAMILY SSF52980 Restriction endonuclease-like IPR011335 Restriction endonuclease type II-like 924 1210 5.36E-70
CDD cd22352 RecB_C-like - - 926 1205 2.80532E-72
NCBIfam TIGR00609 JCVI: exodeoxyribonuclease V subunit beta IPR004586 RecBCD enzyme subunit RecB 9 1208 0.0
Pfam PF13361 UvrD-like helicase C-terminal domain IPR014017 UvrD-like DNA helicase, C-terminal 573 839 1.2E-19
PANTHER PTHR11070 UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER IPR000212 DNA helicase, UvrD/REP type 15 853 2.4E-83
Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. IPR004586 RecBCD enzyme subunit RecB 3 1209 20.065281
Gene3D G3DSA:3.90.320.10 - IPR011604 PD-(D/E)XK endonuclease-like domain superfamily 915 1214 6.5E-85
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 455 866 0.0
Gene3D G3DSA:1.10.486.10 PCRA; domain 4 - - 604 749 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.