Pseudomonas putida S16, PPS_4789

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0070475	rRNA base methylation	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04378	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0008649	rRNA methyltransferase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04378	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF53335	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF04378	Ribosomal RNA large subunit methyltransferase D, RlmJ	IPR007473	Ribosomal RNA large subunit methyltransferase J	32	276	3.8E-98
Hamap	MF_00934	Ribosomal RNA large subunit methyltransferase J [rlmJ].	IPR007473	Ribosomal RNA large subunit methyltransferase J	1	265	38.794674
SUPERFAMILY	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	8	274	2.45E-88
Gene3D	G3DSA:3.40.50.150	Vaccinia Virus protein VP39	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	1	278	8.3E-105
PANTHER	PTHR37426	RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE J	IPR007473	Ribosomal RNA large subunit methyltransferase J	1	278	1.5E-111

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.