Pseudomonas putida S16, PPS_4791

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.309.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004657 proline dehydrogenase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000197
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000197
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF81935
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016491 oxidoreductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.605.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006561 proline biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01238
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0010133 proline catabolic process to glutamate
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000197
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000197
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG ppt00330 Arginine and proline metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppt01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppt01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc ethylene biosynthesis II (microbes) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc (5<i>R</i>)-carbapenem carboxylate biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG ppt01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppt00250 Alanine, aspartate and glutamate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd07125 ALDH_PutA-P5CDH - - 594 1077 0.0
Pfam PF01619 Proline dehydrogenase IPR002872 Proline dehydrogenase domain 236 536 2.7E-92
Gene3D G3DSA:1.20.5.460 Single helix bin - - 129 154 1.5E-15
FunFam G3DSA:3.20.20.220:FF:000004 Bifunctional protein PutA - - 185 577 0.0
Gene3D G3DSA:1.20.5.550 Single Helix bin IPR024090 Proline dehydrogenase PutA, domain I 54 105 3.7E-21
SUPERFAMILY SSF53720 ALDH-like IPR016161 Aldehyde/histidinol dehydrogenase 622 1077 2.09E-128
FunFam G3DSA:1.20.5.550:FF:000001 Bifunctional protein PutA - - 54 105 2.7E-27
Gene3D G3DSA:3.40.605.10 Aldehyde Dehydrogenase; Chain A, domain 1 IPR016162 Aldehyde dehydrogenase, N-terminal 622 1077 0.0
Pfam PF18327 Proline utilization A proline dehydrogenase N-terminal domain IPR041349 Proline utilization A proline dehydrogenase N-terminal domain 56 103 1.3E-17
Gene3D G3DSA:3.20.20.220 - - - 189 577 0.0
FunFam G3DSA:3.40.605.10:FF:000017 Bifunctional protein PutA - - 619 857 7.9E-117
FunFam G3DSA:3.40.309.10:FF:000005 1-pyrroline-5-carboxylate dehydrogenase 1 - - 852 1046 2.5E-59
Gene3D G3DSA:3.40.309.10 Aldehyde Dehydrogenase; Chain A, domain 2 IPR016163 Aldehyde dehydrogenase, C-terminal 852 1046 0.0
PANTHER PTHR42862 DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED - - 204 1284 0.0
NCBIfam TIGR01238 JCVI: L-glutamate gamma-semialdehyde dehydrogenase IPR005933 Bifunctional protein PutA, C-terminal domain 577 1077 0.0
Pfam PF14850 DNA-binding domain of Proline dehydrogenase IPR024082 Proline dehydrogenase PutA, domain II 115 226 1.2E-44
Pfam PF00171 Aldehyde dehydrogenase family IPR015590 Aldehyde dehydrogenase domain 624 1071 8.5E-115
PIRSF PIRSF000197 Bifunct_PutA IPR025703 Bifunctional protein PutA 41 1286 0.0
SUPERFAMILY SSF81935 N-terminal domain of bifunctional PutA protein IPR024089 Proline dehydrogenase PutA, domain I/II 55 228 2.22E-65
FunFam G3DSA:1.20.5.460:FF:000001 Bifunctional protein PutA - - 129 154 4.6E-16
SUPERFAMILY SSF51730 FAD-linked oxidoreductase IPR029041 FAD-linked oxidoreductase-like 229 585 2.39E-122

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.