Pseudomonas putida BIRD-1, PPUBIRD1_0147

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01475
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01475
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR33202:SF6 ZINC UPTAKE REGULATION PROTEIN - - 13 158 1.3E-53
PANTHER PTHR33202 ZINC UPTAKE REGULATION PROTEIN IPR002481 Ferric-uptake regulator 13 158 1.3E-53
CDD cd07153 Fur_like IPR002481 Ferric-uptake regulator 39 154 1.23959E-20
Pfam PF01475 Ferric uptake regulator family IPR002481 Ferric-uptake regulator 31 150 1.6E-9
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 25 155 1.31E-29
Gene3D G3DSA:3.30.1490.190 - IPR043135 Ferric-uptake regulator, C-terminal domain 102 161 1.5E-13
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 14 101 4.5E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.