Pseudomonas putida BIRD-1, PPUBIRD1_0157
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 474 | 644 | 8.7E-58 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 490 | 643 | 1.49E-49 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 474 | 645 | 2.5E-55 |
| Coils | Coil | Coil | - | - | 425 | 445 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 196 | 216 | - |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 278 | 643 | 7.4E-68 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 479 | 644 | 4.9E-51 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 483 | 643 | 1.9E-47 |
| Coils | Coil | Coil | - | - | 450 | 470 | - |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 488 | 642 | 6.02755E-63 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 485 | 641 | 7.7E-46 |
| Coils | Coil | Coil | - | - | 5 | 25 | - |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.