Pseudomonas putida BIRD-1, PPUBIRD1_0365

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0000155	phosphorelay sensor kinase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00512	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00672	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0007165	signal transduction	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00512	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppb02020	Two-component system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PANTHER	PTHR45436	SENSOR HISTIDINE KINASE YKOH	-	-	2	475	3.3E-67
SUPERFAMILY	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	311	474	5.24E-32
Pfam	PF00512	His Kinase A (phospho-acceptor) domain	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	258	319	1.8E-12
CDD	cd18773	PDC1_HK_sensor	-	-	40	167	7.01728E-5
CDD	cd00082	HisKA	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	257	317	1.18981E-13
SMART	SM00387	HKATPase_4	IPR003594	Histidine kinase/HSP90-like ATPase	366	476	6.6E-20
SMART	SM00388	HisKA_10	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	255	321	4.4E-16
CDD	cd06225	HAMP	-	-	208	250	9.84326E-4
SMART	SM00304	HAMP_11	IPR003660	HAMP domain	204	255	2.3E-4
SUPERFAMILY	SSF47384	Homodimeric domain of signal transducing histidine kinase	IPR036097	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	240	319	2.55E-14
Coils	Coil	Coil	-	-	295	318	-
Gene3D	G3DSA:1.10.287.130	-	-	-	256	321	1.9E-15
Gene3D	G3DSA:6.10.340.10	-	-	-	167	255	4.3E-8
Gene3D	G3DSA:3.30.450.20	PAS domain	-	-	81	166	8.8E-6
Pfam	PF00672	HAMP domain	IPR003660	HAMP domain	202	251	8.7E-8
Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	IPR003594	Histidine kinase/HSP90-like ATPase	370	475	3.6E-13
SUPERFAMILY	SSF103190	Sensory domain-like	IPR029151	Periplasmic sensor-like domain superfamily	64	179	5.1E-15
Gene3D	G3DSA:3.30.565.10	-	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	326	477	1.3E-27

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.