Pseudomonas putida BIRD-1, PPUBIRD1_0370

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01590
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00130 PAS IPR000014 PAS domain 352 454 2.06902E-8
SMART SM00091 pas_2 IPR000014 PAS domain 14 87 130.0
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 641 890 2.09E-90
SMART SM00091 pas_2 IPR000014 PAS domain 343 410 3.2E-6
CDD cd01948 EAL IPR001633 EAL domain 642 882 2.10965E-97
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 468 621 9.1E-39
CDD cd01949 GGDEF IPR000160 GGDEF domain 469 624 1.49737E-53
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 343 463 2.8E-13
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 467 637 4.4E-50
SMART SM00052 duf2_2 IPR001633 EAL domain 636 882 7.1E-116
Pfam PF13426 PAS domain IPR000014 PAS domain 355 456 2.9E-13
Pfam PF00563 EAL domain IPR001633 EAL domain 642 877 9.2E-74
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 349 455 1.5E-18
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 145 341 3.4E-17
SMART SM00065 gaf_1 IPR003018 GAF domain 192 340 2.8E-9
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 638 891 8.3E-101
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 637 892 2.5E-97
SMART SM00086 pac_2 IPR001610 PAC motif 415 457 0.0032
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 464 625 8.2E-36
Gene3D G3DSA:3.30.450.20 PAS domain - - 342 466 1.5E-24
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 330 886 0.0
SUPERFAMILY SSF55781 GAF domain-like - - 195 338 7.63E-20
Pfam PF01590 GAF domain IPR003018 GAF domain 193 330 9.0E-12
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 473 627 4.08E-42
SMART SM00267 duf1_3 IPR000160 GGDEF domain 457 626 2.2E-55

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.