Pseudomonas putida BIRD-1, PPUBIRD1_0370
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: TCGCGACACAAGGCCGC-N29-GCGGCCTTGTGTCGCGA | 430203 | 430265 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: ACTGCCCCTC-N5-GAGGGGCAGT | 430359 | 430383 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Rho-independent transcription terminator TERM 113 | 430308 | 430327 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CGGTAAACACC-N7-GGTGTTTACCG | 428149 | 428177 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GCCATCGACGC-N86-GCGTCGATGGC | 429149 | 429256 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: TTCGCGGGCA-N62-TGCCCGCGAA | 427215 | 427296 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GCCCGCTCCCACAG-N32-CTGTGGGAGCGGGC | 427226 | 427285 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |