Pseudomonas putida BIRD-1, PPUBIRD1_0399 (bioB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009102 biotin biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00433
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04055
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04055
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004076 biotin synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00433
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb00780 Biotin metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 56 207 7.5E-14
Pfam PF06968 Biotin and Thiamin Synthesis associated domain IPR010722 Biotin and thiamin synthesis-associated domain 226 316 3.3E-20
Hamap MF_01694 Biotin synthase [bioB]. IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB 11 319 41.669
SFLD SFLDF00272 biotin synthase IPR024177 Biotin synthase 4 325 0.0
SUPERFAMILY SSF102114 11 319 6.54E-91
Gene3D G3DSA:3.20.20.70 IPR013785 Aldolase-type TIM barrel 10 321 0.0
SFLD SFLDS00029 Radical SAM IPR007197 Radical SAM 4 325 0.0
SMART SM00729 IPR006638 Elp3/MiaB/NifB 49 261 9.4E-38
SMART SM00876 IPR010722 Biotin and thiamin synthesis-associated domain 226 318 2.6E-47
PIRSF PIRSF001619 IPR024177 Biotin synthase 1 325 0.0
TIGRFAM TIGR00433 bioB: biotin synthase IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB 20 316 1.4E-123
CDD cd01335 Radical_SAM 56 255 4.81863E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.