Pseudomonas putida BIRD-1, PPUBIRD1_0622 (pbpC)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0008955	peptidoglycan glycosyltransferase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02073	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0009252	peptidoglycan biosynthetic process	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02073	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0008658	penicillin binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00905	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
MetaCyc		peptidoglycan biosynthesis III (mycobacteria)	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion
KEGG	ppb00550	Peptidoglycan biosynthesis	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
MetaCyc		peptidoglycan biosynthesis IV (Enterococcus faecium)	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion
MetaCyc		peptidoglycan biosynthesis II (staphylococci)	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion
MetaCyc		peptidoglycan biosynthesis V (β-lactam resistance)	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
NCBIfam	TIGR02073	JCVI: penicillin-binding protein 1C	IPR011815	Penicillin-binding protein 1C	32	769	0.0
Gene3D	G3DSA:3.40.710.10	-	IPR012338	Beta-lactamase/transpeptidase-like	258	581	1.7E-60
Gene3D	G3DSA:1.10.3810.10	-	IPR036950	Penicillin binding protein transglycosylase domain	46	241	1.4E-55
Pfam	PF00905	Penicillin binding protein transpeptidase domain	IPR001460	Penicillin-binding protein, transpeptidase	294	411	8.9E-8
Pfam	PF06832	Penicillin-Binding Protein C-terminus Family	IPR009647	Penicillin-binding, C-terminal	681	767	4.6E-16
FunFam	G3DSA:1.10.3810.10:FF:000006	Penicillin-binding protein 1C	-	-	47	241	3.0E-101
FunFam	G3DSA:3.40.710.10:FF:000021	Penicillin-binding protein 1C	-	-	242	588	0.0
SUPERFAMILY	SSF53955	Lysozyme-like	IPR023346	Lysozyme-like domain superfamily	32	249	4.22E-64
Pfam	PF00912	Transglycosylase	IPR001264	Glycosyl transferase, family 51	52	217	9.2E-50
SUPERFAMILY	SSF56601	beta-lactamase/transpeptidase-like	IPR012338	Beta-lactamase/transpeptidase-like	199	633	1.25E-89
PANTHER	PTHR32282	BINDING PROTEIN TRANSPEPTIDASE, PUTATIVE-RELATED	-	-	34	569	8.2E-128

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.