Pseudomonas putida BIRD-1, PPUBIRD1_0624

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF46894	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00038	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0000160	phosphorelay signal transduction system	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00448	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	211	223	1.9E-8
SMART	SM00448	REC_2	IPR001789	Signal transduction response regulator, receiver domain	1	114	3.9E-23
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	195	211	1.9E-8
SUPERFAMILY	SSF52172	CheY-like	IPR011006	CheY-like superfamily	2	149	2.28E-30
CDD	cd00156	REC	-	-	2	104	6.44883E-25
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	181	195	1.9E-8
SUPERFAMILY	SSF46894	C-terminal effector domain of the bipartite response regulators	IPR016032	Signal transduction response regulator, C-terminal effector	170	234	2.48E-16
Pfam	PF00196	Bacterial regulatory proteins, luxR family	IPR000792	Transcription regulator LuxR, C-terminal	180	233	3.4E-13
CDD	cd06170	LuxR_C_like	IPR000792	Transcription regulator LuxR, C-terminal	181	232	5.32077E-14
Pfam	PF00072	Response regulator receiver domain	IPR001789	Signal transduction response regulator, receiver domain	2	113	5.7E-21
Gene3D	G3DSA:1.10.10.10	-	IPR036388	Winged helix-like DNA-binding domain superfamily	175	240	1.1E-17
SMART	SM00421	luxrmega5	IPR000792	Transcription regulator LuxR, C-terminal	178	235	9.7E-17
Gene3D	G3DSA:3.40.50.2300	-	-	-	1	171	1.3E-28
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	155	179	-
Coils	Coil	Coil	-	-	131	158	-
PANTHER	PTHR43214	TWO-COMPONENT RESPONSE REGULATOR	IPR039420	Transcriptional regulatory protein WalR-like	2	233	2.7E-27
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	155	175	-

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.