Pseudomonas putida BIRD-1, PPUBIRD1_0633

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0043565	sequence-specific DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00342	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00342	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02311	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SMART	SM00342	aracneu4	IPR018060	DNA binding HTH domain, AraC-type	176	258	2.2E-24
Pfam	PF12833	Helix-turn-helix domain	IPR018060	DNA binding HTH domain, AraC-type	182	257	7.8E-21
FunFam	G3DSA:1.10.10.60:FF:000132	AraC family transcriptional regulator	-	-	157	259	2.6E-36
PANTHER	PTHR11019	HTH-TYPE TRANSCRIPTIONAL REGULATOR NIMR	-	-	7	256	4.7E-81
SUPERFAMILY	SSF46689	Homeodomain-like	IPR009057	Homeobox-like domain superfamily	213	258	3.29E-7
Gene3D	G3DSA:2.60.120.10	Jelly Rolls	IPR014710	RmlC-like jelly roll fold	21	94	4.6E-5
CDD	cd06124	cupin_NimR-like_N	-	-	20	114	6.66359E-33
SUPERFAMILY	SSF51182	RmlC-like cupins	IPR011051	RmlC-like cupin domain superfamily	16	185	1.78E-18
Gene3D	G3DSA:1.10.10.60	-	-	-	167	259	3.6E-20
Pfam	PF02311	AraC-like ligand binding domain	IPR003313	AraC-type arabinose-binding/dimerisation domain	33	118	1.2E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.