Pseudomonas putida BIRD-1, PPUBIRD1_0651 (rpsT)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR33398
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR33398
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR33398
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR33398
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00029 JCVI: 30S ribosomal protein S20 IPR002583 Small ribosomal subunit protein bS20 1 84 2.6E-30
PANTHER PTHR33398 30S RIBOSOMAL PROTEIN S20 IPR002583 Small ribosomal subunit protein bS20 3 88 1.5E-20
Pfam PF01649 Ribosomal protein S20 IPR002583 Small ribosomal subunit protein bS20 2 83 2.9E-28
MobiDBLite mobidb-lite consensus disorder prediction - - 1 23 -
Gene3D G3DSA:1.20.58.110 Ribosomal protein S20 IPR036510 Small ribosomal subunit protein bS20 superfamily 1 87 1.2E-27
FunFam G3DSA:1.20.58.110:FF:000001 30S ribosomal protein S20 - - 1 87 9.6E-35
SUPERFAMILY SSF46992 Ribosomal protein S20 IPR036510 Small ribosomal subunit protein bS20 superfamily 3 86 1.28E-31
Hamap MF_00500 30S ribosomal protein S20 [rpsT]. IPR002583 Small ribosomal subunit protein bS20 1 85 17.67853

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.