Pseudomonas putida BIRD-1, PPUBIRD1_1036 (gcvT)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.1360.120
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006546 glycine catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00528
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004047 aminomethyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00528
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb00260 Glycine, serine and threonine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb00630 Glyoxylate and dicarboxylate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb00670 One carbon pool by folate 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF101790 Aminomethyltransferase beta-barrel domain IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal 279 372 3.43E-26
Gene3D G3DSA:3.30.1360.120 Probable tRNA modification gtpase trme; domain 1 IPR027266 GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1 7 234 3.2E-86
PANTHER PTHR43757 AMINOMETHYLTRANSFERASE IPR028896 Aminomethyltransferase-like 5 372 1.2E-121
SUPERFAMILY SSF103025 Folate-binding domain - - 5 286 1.57E-92
Gene3D G3DSA:2.40.30.110 - - - 285 362 1.0E-28
Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain IPR013977 Glycine cleavage T-protein, C-terminal barrel domain 288 366 1.1E-19
FunFam G3DSA:3.30.70.1400:FF:000001 Aminomethyltransferase - - 55 139 2.0E-25
Gene3D G3DSA:4.10.1250.10 Aminomethyltransferase fragment - - 235 283 7.7E-19
Gene3D G3DSA:3.30.70.1400 - - - 56 142 3.2E-86
NCBIfam TIGR00528 JCVI: glycine cleavage system aminomethyltransferase GcvT IPR006223 Glycine cleavage system T protein 6 366 1.7E-108
Pfam PF01571 Aminomethyltransferase folate-binding domain IPR006222 Aminomethyltransferase, folate-binding domain 10 257 1.1E-88
PIRSF PIRSF006487 GCST - - 1 373 2.3E-83

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.