Pseudomonas putida BIRD-1, PPUBIRD1_1147

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006431 methionyl-tRNA aminoacylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00814
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00398
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000049 tRNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01588
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004812 aminoacyl-tRNA ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47323
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006418 tRNA aminoacylation for protein translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47323
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00398
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004825 methionine-tRNA ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00814
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb00970 Aminoacyl-tRNA biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb00450 Selenocompound metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01041 Methionyl-tRNA synthetase signature IPR033911 Methioninyl-tRNA synthetase core domain 250 261 9.6E-25
Pfam PF09334 tRNA synthetases class I (M) IPR015413 Methionyl/Leucyl tRNA synthetase 7 395 0.0
PRINTS PR01041 Methionyl-tRNA synthetase signature IPR033911 Methioninyl-tRNA synthetase core domain 383 394 9.6E-25
Gene3D G3DSA:2.20.28.20 - IPR029038 Methionyl-tRNA synthetase, Zn-domain 141 175 0.0
Gene3D G3DSA:1.10.730.10 - - - 388 526 6.4E-34
PRINTS PR01041 Methionyl-tRNA synthetase signature IPR033911 Methioninyl-tRNA synthetase core domain 41 55 9.6E-25
CDD cd02800 tRNA_bind_EcMetRS_like IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal 573 679 1.24745E-44
CDD cd00814 MetRS_core IPR033911 Methioninyl-tRNA synthetase core domain 7 370 0.0
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 570 679 2.4E-35
NCBIfam TIGR00399 JCVI: methionine--tRNA ligase subunit beta IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal 551 679 3.5E-41
Pfam PF01588 Putative tRNA binding domain IPR002547 tRNA-binding domain 583 676 3.1E-22
Pfam PF19303 Anticodon binding domain of methionyl tRNA ligase IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain 410 517 1.8E-6
PRINTS PR01041 Methionyl-tRNA synthetase signature IPR033911 Methioninyl-tRNA synthetase core domain 9 22 9.6E-25
Hamap MF_00098 Methionine--tRNA ligase [metG]. IPR023458 Methionine-tRNA ligase, type 1 5 545 39.358952
FunFam G3DSA:2.40.50.140:FF:000042 Methionine--tRNA ligase - - 569 679 2.9E-43
PANTHER PTHR45765 METHIONINE--TRNA LIGASE IPR023458 Methionine-tRNA ligase, type 1 3 672 0.0
PRINTS PR01041 Methionyl-tRNA synthetase signature IPR033911 Methioninyl-tRNA synthetase core domain 89 100 9.6E-25
SUPERFAMILY SSF57770 Methionyl-tRNA synthetase (MetRS), Zn-domain IPR029038 Methionyl-tRNA synthetase, Zn-domain 141 175 2.75E-12
SUPERFAMILY SSF47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding 389 547 6.32E-39
Gene3D G3DSA:3.40.50.620 HUPs IPR014729 Rossmann-like alpha/beta/alpha sandwich fold 7 383 0.0
FunFam G3DSA:1.10.730.10:FF:000005 Methionine--tRNA ligase - - 388 526 8.0E-56
NCBIfam TIGR00398 JCVI: methionine--tRNA ligase IPR014758 Methionyl-tRNA synthetase 7 535 0.0
SUPERFAMILY SSF52374 Nucleotidylyl transferase - - 4 386 1.71E-97
CDD cd07957 Anticodon_Ia_Met IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain 373 505 1.20904E-34
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 573 678 2.06E-28
PRINTS PR01041 Methionyl-tRNA synthetase signature IPR033911 Methioninyl-tRNA synthetase core domain 290 305 9.6E-25
FunFam G3DSA:2.20.28.20:FF:000001 Methionine--tRNA ligase - - 141 175 7.0E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.