Pseudomonas putida BIRD-1, PPUBIRD1_1149 (capB)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003676	nucleic acid binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00357	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00050	Cold shock protein signature	IPR002059	Cold-shock protein, DNA-binding	42	60	1.5E-15
Gene3D	G3DSA:2.40.50.140	-	IPR012340	Nucleic acid-binding, OB-fold	4	68	4.8E-27
CDD	cd04458	CSP_CDS	IPR002059	Cold-shock protein, DNA-binding	5	68	6.1203E-28
PANTHER	PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	-	-	1	66	2.7E-18
PRINTS	PR00050	Cold shock protein signature	IPR002059	Cold-shock protein, DNA-binding	27	36	1.5E-15
PIRSF	PIRSF002599	Cold_shock_A	IPR012156	Cold shock, CspA	1	69	3.6E-22
SMART	SM00357	csp_8	IPR011129	Cold shock domain	6	69	2.8E-26
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	IPR012340	Nucleic acid-binding, OB-fold	3	68	2.57E-23
PRINTS	PR00050	Cold shock protein signature	IPR002059	Cold-shock protein, DNA-binding	7	22	1.5E-15
FunFam	G3DSA:2.40.50.140:FF:000006	Cold shock protein CspC	-	-	4	69	2.0E-28
Pfam	PF00313	'Cold-shock' DNA-binding domain	IPR002059	Cold-shock protein, DNA-binding	6	67	4.7E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.