Pseudomonas putida BIRD-1, PPUBIRD1_1149 (capB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00313
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PIRSF PIRSF002599 Cold_shock_A IPR012156 Cold shock, CspA 1 69 3.6E-22
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 3 68 2.57E-23
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 4 68 4.8E-27
PRINTS PR00050 Cold shock protein signature IPR002059 Cold-shock protein, DNA-binding 42 60 1.5E-15
SMART SM00357 csp_8 IPR011129 Cold shock domain 6 69 2.8E-26
PANTHER PTHR11544 COLD SHOCK DOMAIN CONTAINING PROTEINS - - 1 68 2.2E-30
PRINTS PR00050 Cold shock protein signature IPR002059 Cold-shock protein, DNA-binding 27 36 1.5E-15
PANTHER PTHR11544:SF126 COLD SHOCK PROTEIN SCOF - - 1 68 2.2E-30
CDD cd04458 CSP_CDS IPR002059 Cold-shock protein, DNA-binding 5 68 5.43355E-28
PRINTS PR00050 Cold shock protein signature IPR002059 Cold-shock protein, DNA-binding 7 22 1.5E-15
Pfam PF00313 'Cold-shock' DNA-binding domain IPR002059 Cold-shock protein, DNA-binding 6 67 4.7E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.