Pseudomonas putida BIRD-1, PPUBIRD1_1149 (capB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida BIRD-1
GCF_000183645.1|latest |
| Locus Tag |
PPUBIRD1_1149
|
| Name |
capB
|
| Replicon | chromosome |
| Genomic location | 1298809 - 1299018 (- strand) |
Cross-References
| RefSeq | YP_005929036.1 |
| GI | 386010759 |
| Entrez | 12519383 |
| NCBI Locus Tag | PPUBIRD1_1149 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
CapB
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 0.22 |
| Kyte-Doolittle Hydrophobicity Value | -0.429 |
| Molecular Weight (kDa) | 7.6 |
| Isoelectric Point (pI) | 7.54 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 493 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG015263 (205 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_1149
Search term: capB
Search term: CapB
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986]
E-value:
5.7e-07
Percent Identity:
37.7
|
|
Ensembl
110, assembly
GRCh38.p14
|
lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986]
E-value:
5.7e-07
Percent Identity:
37.7
|
References
No references are associated with this feature.