Pseudomonas putida BIRD-1, PPUBIRD1_1152

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida BIRD-1
GCF_000183645.1|latest
Locus Tag
PPUBIRD1_1152
Name
Replicon chromosome
Genomic location 1300241 - 1300891 (- strand)

Cross-References

RefSeq YP_005929039.1
GI 386010762
Entrez 12519386
NCBI Locus Tag PPUBIRD1_1152

Product

Feature Type CDS
Coding Frame 1
Product Name
ICC-like phosphoesterase
Synonyms
Evidence for Translation
Charge (pH 7) 5.06
Kyte-Doolittle Hydrophobicity Value -0.171
Molecular Weight (kDa) 24339.8
Isoelectric Point (pI) 8.74

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6NVO DNA BINDING PROTEIN 02/05/19 Crystal structure of Pseudomonas putida nuclease MPE Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440) 2.196 X-RAY DIFFRACTION 97.2
6NVP DNA BINDING PROTEIN 02/05/19 Crystal structure of Pseudomonas putida nuclease MPE Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440) 2 X-RAY DIFFRACTION 97.2

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 144 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG015265 (172 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_1152

Human Homologs

References

No references are associated with this feature.