Pseudomonas putida BIRD-1, PPUBIRD1_1153

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF037307
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF037307
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 235 390 1.6E-17
PIRSF PIRSF037307 Lhr-like_helic IPR017170 Lhr-like ATP-dependent RNA helicase, predicted 3 813 0.0
CDD cd18796 SF2_C_LHR - - 215 361 2.85215E-62
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 15 219 2.0E-21
PANTHER PTHR47962 ATP-DEPENDENT HELICASE LHR-RELATED-RELATED - - 8 813 0.0
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 248 348 3.7E-10
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 5 204 1.3E-40
Pfam PF08494 DEAD/H associated IPR013701 DEAD/H associated 596 781 1.6E-44
Pfam PF19306 Helicase Lhr winged helix domain IPR045628 Helicase Lhr-like, winged helix domain 390 538 1.8E-60
CDD cd17922 DEXHc_LHR-like - - 33 201 5.9124E-73
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 21 192 1.4E-20
Coils Coil Coil - - 740 760 -
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 266 347 4.1E-4
TIGRFAM TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated IPR026362 DEXH box helicase, DNA ligase-associated 8 810 0.0
Coils Coil Coil - - 795 815 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 26 358 1.07E-42
PANTHER PTHR47962:SF3 HELICASE-RELATED PROTEIN - - 8 813 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.