Pseudomonas putida BIRD-1, PPUBIRD1_1155

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003910 DNA ligase (ATP) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04675
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb03420 Nucleotide excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd07972 OBF_DNA_ligase_Arch_LigB - - 425 549 2.35416E-61
Pfam PF01068 ATP dependent DNA ligase domain IPR012310 DNA ligase, ATP-dependent, central 232 420 2.1E-25
Gene3D G3DSA:1.10.3260.10 - IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily 2 184 2.5E-10
PANTHER PTHR45674 DNA LIGASE 1/3 FAMILY MEMBER - - 3 551 1.0E-70
Pfam PF04679 ATP dependent DNA ligase C terminal region IPR012309 DNA ligase, ATP-dependent, C-terminal 441 536 1.7E-8
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 208 420 2.88E-54
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 209 420 7.6E-42
PANTHER PTHR45674:SF9 DNA LIGASE 3 - - 3 551 1.0E-70
TIGRFAM TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family IPR026333 ATP-dependent DNA ligase, PP_1105 family 2 551 0.0
CDD cd07897 Adenylation_DNA_ligase_Bac1 - - 207 424 2.39366E-116
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 425 550 3.43E-28
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 424 552 1.3E-27
Pfam PF04675 DNA ligase N terminus IPR012308 DNA ligase, ATP-dependent, N-terminal 2 161 4.1E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.