Pseudomonas putida BIRD-1, PPUBIRD1_1621

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000018
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0020037 heme binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00034
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005506 iron ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000018
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009055 electron transfer activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00034
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000018
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00605 Class IC cytochrome C signature IPR008168 Cytochrome c, class IC 359 381 8.6E-5
Gene3D G3DSA:1.10.760.10 - IPR036909 Cytochrome c-like domain superfamily 4 136 7.0E-9
Pfam PF00034 Cytochrome c IPR009056 Cytochrome c-like domain 28 128 4.5E-7
PIRSF PIRSF000018 Mb_ADH_cytochrome_c IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit 1 403 0.0
Pfam PF00034 Cytochrome c IPR009056 Cytochrome c-like domain 298 385 1.9E-10
SUPERFAMILY SSF46626 Cytochrome c IPR036909 Cytochrome c-like domain superfamily 174 283 2.79E-13
Gene3D G3DSA:1.10.760.10 - IPR036909 Cytochrome c-like domain superfamily 280 403 8.1E-23
PRINTS PR00605 Class IC cytochrome C signature IPR008168 Cytochrome c, class IC 306 317 8.6E-5
SUPERFAMILY SSF46626 Cytochrome c IPR036909 Cytochrome c-like domain superfamily 21 148 4.45E-23
PANTHER PTHR35008 BLL4482 PROTEIN-RELATED - - 9 402 9.9E-93
SUPERFAMILY SSF46626 Cytochrome c IPR036909 Cytochrome c-like domain superfamily 299 387 1.1E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.