Pseudomonas putida BIRD-1, PPUBIRD1_1790

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0016853	isomerase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PTHR43149	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppb01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb00281	Geraniol degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb00627	Aminobenzoate degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb00360	Phenylalanine metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb00280	Valine, leucine and isoleucine degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb00410	beta-Alanine metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb00650	Butanoate metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb00930	Caprolactam degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb00071	Fatty acid degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb01212	Fatty acid metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb01120	Microbial metabolism in diverse environments	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb00380	Tryptophan metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb00310	Lysine degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb01130	Biosynthesis of antibiotics	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb00903	Limonene and pinene degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb00362	Benzoate degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb00640	Propanoate metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb01110	Biosynthesis of secondary metabolites	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF00378	Enoyl-CoA hydratase/isomerase	IPR001753	Enoyl-CoA hydratase/isomerase	12	269	9.7E-49
Gene3D	G3DSA:3.90.226.10	-	-	-	2	211	1.6E-66
SUPERFAMILY	SSF52096	ClpP/crotonase	IPR029045	ClpP/crotonase-like domain superfamily	2	269	1.08E-79
Gene3D	G3DSA:1.10.12.10	-	IPR014748	Enoyl-CoA hydratase, C-terminal	212	270	6.9E-26
FunFam	G3DSA:3.90.226.10:FF:000024	Delta3,5-delta2,4-dienoyl-CoA isomerase	-	-	1	211	3.8E-90
CDD	cd06558	crotonase-like	-	-	7	210	8.57705E-68
PANTHER	PTHR43149	ENOYL-COA HYDRATASE	IPR045002	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase Ech1-like	3	269	4.6E-112
FunFam	G3DSA:1.10.12.10:FF:000004	Delta3,5-delta2,4-dienoyl-CoA isomerase	-	-	212	270	3.2E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.