Pseudomonas putida BIRD-1, PPUBIRD1_1798 (purB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009152 purine ribonucleotide biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00928
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48557
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006188 IMP biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08328
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08328
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb00250 Alanine, aspartate and glutamate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 295 311 1.9E-18
PANTHER PTHR43411 ADENYLOSUCCINATE LYASE IPR047136 Adenylosuccinate lyase PurB, bacteria 2 456 0.0
Gene3D G3DSA:1.10.275.10 - IPR024083 Fumarase/histidase, N-terminal 1 117 5.5E-48
SUPERFAMILY SSF48557 L-aspartase-like IPR008948 L-Aspartase-like 10 455 8.48E-104
FunFam G3DSA:1.10.275.10:FF:000003 Adenylosuccinate lyase - - 1 117 1.1E-54
Pfam PF00206 Lyase IPR022761 Fumarate lyase, N-terminal 14 313 9.3E-64
FunFam G3DSA:1.20.200.10:FF:000004 Adenylosuccinate lyase - - 118 385 0.0
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 252 279 1.9E-18
Gene3D G3DSA:1.10.40.30 - - - 383 446 0.0
NCBIfam TIGR00928 JCVI: adenylosuccinate lyase IPR004769 Adenylosuccinate lyase 12 455 1.6E-130
Gene3D G3DSA:1.20.200.10 Fumarase/aspartase (Central domain) - - 118 450 0.0
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 163 181 1.9E-18
CDD cd01598 PurB - - 23 447 0.0
Pfam PF08328 Adenylosuccinate lyase C-terminal IPR013539 Adenylosuccinate lyase PurB, C-terminal 332 446 2.0E-50
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 117 135 1.9E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.