Pseudomonas putida BIRD-1, PPUBIRD1_2001

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00082
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50110
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00082
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00065
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.565.10 IPR036890 Histidine kinase/HSP90-like ATPase superfamily 549 709 1.0E-46
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 691 704 2.8E-15
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 650 660 2.8E-15
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 595 705 3.7E-27
Gene3D G3DSA:3.40.50.2300 877 1013 4.5E-17
CDD cd00082 HisKA IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 481 544 9.10238E-13
SMART SM00065 IPR003018 GAF domain 247 391 1.1E-8
CDD cd00156 REC IPR001789 Signal transduction response regulator, receiver domain 760 870 1.61346E-19
SUPERFAMILY SSF55781 236 409 2.7E-20
ProSiteProfiles PS50110 Response regulatory domain profile. IPR001789 Signal transduction response regulator, receiver domain 758 871 29.015
Pfam PF05227 CHASE3 domain IPR007891 CHASE3 39 172 3.3E-39
MobiDBLite mobidb-lite consensus disorder prediction 428 443 -
SUPERFAMILY SSF52172 IPR011006 CheY-like superfamily 757 872 1.34E-26
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 759 866 8.5E-16
ProSiteProfiles PS50109 Histidine kinase domain profile. IPR005467 Histidine kinase domain 487 707 47.598
Gene3D G3DSA:3.40.50.12740 1024 1148 4.1E-44
Coils Coil 597 617 -
Gene3D G3DSA:3.30.450.40 IPR029016 GAF-like domain superfamily 216 393 2.0E-17
CDD cd00156 REC IPR001789 Signal transduction response regulator, receiver domain 1028 1143 5.09379E-34
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1027 1139 3.3E-29
Gene3D G3DSA:1.20.1440.210 45 170 2.2E-31
Pfam PF13185 GAF domain IPR003018 GAF domain 251 382 1.1E-13
SMART SM00448 IPR001789 Signal transduction response regulator, receiver domain 757 867 1.1E-18
Gene3D G3DSA:1.10.287.130 466 548 1.3E-22
CDD cd16922 HATPase_EvgS-ArcB-TorS-like 600 704 4.71995E-48
SUPERFAMILY SSF52172 IPR011006 CheY-like superfamily 879 1009 5.27E-18
ProSiteProfiles PS50110 Response regulatory domain profile. IPR001789 Signal transduction response regulator, receiver domain 1026 1143 48.55
Pfam PF00512 His Kinase A (phospho-acceptor) domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 481 548 4.9E-16
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 881 963 3.8E-14
SUPERFAMILY SSF47384 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily 466 549 6.08E-20
Gene3D G3DSA:3.40.50.12740 757 876 4.0E-26
Coils Coil 860 880 -
ProSiteProfiles PS50110 Response regulatory domain profile. IPR001789 Signal transduction response regulator, receiver domain 880 996 20.914
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 632 646 2.8E-15
SMART SM00448 IPR001789 Signal transduction response regulator, receiver domain 879 993 3.1E-7
MobiDBLite mobidb-lite consensus disorder prediction 415 448 -
SUPERFAMILY SSF52172 IPR011006 CheY-like superfamily 1023 1144 1.22E-39
SUPERFAMILY SSF55874 IPR036890 Histidine kinase/HSP90-like ATPase superfamily 537 705 6.02E-45
SMART SM00387 IPR003594 Histidine kinase/HSP90-like ATPase 595 707 1.9E-35
SMART SM00388 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 480 548 5.9E-21
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 667 685 2.8E-15
Coils Coil 383 477 -
SMART SM00448 IPR001789 Signal transduction response regulator, receiver domain 1025 1139 2.3E-40
Coils Coil 208 228 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.