Pseudomonas putida BIRD-1, PPUBIRD1_2237

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.8.500 HAMP domain in histidine kinase - - 382 429 1.3E-9
Gene3D G3DSA:3.30.450.20 PAS domain - - 89 240 1.6E-28
CDD cd06225 HAMP - - 386 432 1.53029E-8
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 15 713 8.4E-129
Pfam PF00672 HAMP domain IPR003660 HAMP domain 380 433 1.3E-9
Coils Coil Coil - - 488 508 -
CDD cd11386 MCP_signal - - 479 678 1.70663E-53
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 452 713 1.7E-86
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 405 714 1.83E-81
Coils Coil Coil - - 583 610 -
Gene3D G3DSA:1.10.287.950 - - - 430 714 2.8E-67
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 383 714 2.4E-101
SMART SM00304 HAMP_11 IPR003660 HAMP domain 383 437 7.9E-9
CDD cd12913 PDC1_MCP_like - - 90 242 1.45269E-22
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 525 681 1.1E-45

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.