Pseudomonas putida BIRD-1, PPUBIRD1_2237
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppb02030 | Bacterial chemotaxis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppb02020 | Two-component system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd11386 | MCP_signal | - | - | 479 | 678 | 1.70663E-53 |
| SUPERFAMILY | SSF58104 | Methyl-accepting chemotaxis protein (MCP) signaling domain | - | - | 405 | 714 | 1.83E-81 |
| Pfam | PF00672 | HAMP domain | IPR003660 | HAMP domain | 380 | 433 | 1.3E-9 |
| CDD | cd06225 | HAMP | - | - | 386 | 432 | 1.53029E-8 |
| Coils | Coil | Coil | - | - | 583 | 610 | - |
| PANTHER | PTHR32089 | METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB | - | - | 15 | 713 | 8.4E-129 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 89 | 240 | 1.6E-28 |
| FunFam | G3DSA:1.10.287.950:FF:000001 | Methyl-accepting chemotaxis sensory transducer | - | - | 383 | 714 | 2.4E-101 |
| Gene3D | G3DSA:1.10.8.500 | HAMP domain in histidine kinase | - | - | 382 | 429 | 1.3E-9 |
| Pfam | PF00015 | Methyl-accepting chemotaxis protein (MCP) signalling domain | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 525 | 681 | 1.1E-45 |
| Coils | Coil | Coil | - | - | 488 | 508 | - |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 383 | 437 | 7.9E-9 |
| Gene3D | G3DSA:1.10.287.950 | - | - | - | 430 | 714 | 2.8E-67 |
| SMART | SM00283 | MA_2 | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 452 | 713 | 1.7E-86 |
| CDD | cd12913 | PDC1_MCP_like | - | - | 90 | 242 | 1.45269E-22 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.